Publications
Hoffmann C, Leis A, Niederweis M, Plitzko JM, Engelhardt H.
(2008).
Disclosure of the mycobacterial outer membrane: Cryo-electron tomography and vitreous sections reveal the lipid bilayer structure.
Proceedings of the National Academy of Science USA, vol. 105, issue 10, pp. 3963-3967 .
abstract
[WP04]
Hildner R, Lemmer U, Scherf U, van Heel M and Köhler J
(2007).
Revealing the Electron Phonon Coupling in a Conjugated Polymer by Single Molecule Spectroscopy.
Advanced Material, vol. 19, issue 15, pp. 1978-1982.
abstract
[WP10]
Castaño-Díez D, Mueller H, Frangakis AS
(2007).
Implementation and performance evaluation of reconstruction algorithms on graphics processors.
J Struct Biol., vol. 157, issue 1, pp.288-295.
abstract
[WP06]
Castaño-Díez D, Al-Amoudi A, Glynn AM, Seybert A, Frangakis AS
(2007).
Fiducial-less alignment of cryo-sections.
J Struct Biol, vol. 159, issue 3, pp. 413-421.
abstract
[WP06]
Al-Amoudi A, Díez DC, Betts MJ, Frangakis AS
(2007).
The molecular architecture of cadherins in native epidermal desmosomes.
Nature, vol. 450, issue 7171, pp. 832-837.
abstract
[WP04]
Mari, M.
Bujny, M. V.
Zeuschner, D.
Geerts, W. J.
Griffith, J.
Petersen, C. M.
Cullen, P. J.
Klumperman, J.
Geuze, H. J.
(2008).
SNX-1 Defines an Early Endosomal Recycling Exit for Sortilin and Mannose 6-Phosphate Receptors.
Traffic, vol. 9, pp. 380-393.
abstract
[WP01]
Chen JZ, Sachse C, Xu C, Mielke T, Spahn CM, Grigorieff N
(2008).
A dose-rate effect in single-particle electron microscopy.
J Struct Biol. , vol.161, issue 1, pp. 92-100.
abstract
[WP09]
Wendler P, Shorter J, Plisson C, Cashikar AG, Lindquist S, Saibil HR
(2007).
Atypical AAA+ subunit packing creates an expanded cavity for disaggregation by the protein-remodeling factor Hsp104..
Cell, issue 131, pp. 1366-1377.
abstract
[WP09]
Bilbao-Castro JR, García I, Fernández JJ
(2007).
EGEETomo: a user-friendly, fault-tolerant and grid-enabled application for 3D reconstruction in electron tomography..
Bioinformatics, vol. 23, issue 24, pp.3391-3393..
abstract
[WP06]
Schwarz H, Humbel BM
(2007).
Correlative light and electron microscopy using immunolabeled resin sections..
Methods Mol Biol., Vol.369, pp. 229-256.
abstract
[WP13]
Elad, N.
Farr, G. W.
Clare, D. K.
Orlova, E. V.
Horwich, A. L.
Saibil, H. R.
(2007).
Topologies of a substrate protein bound to the chaperonin GroEL.
Mol Cell Vol. 26, Issue 3, pp.415-426.
abstract
[WP09]
J. J. Fernández, S. Li and V. Lucic
(2007).
Three-Dimensional Anisotropic Noise Reduction with Automated Parameter Tuning: Application to Electron Cryotomography.
Lecture Notes in Computer Science, Vol. 4788, pp.60-69 (Springer Verlag).
abstract
[WP06]
José-Jesús Fernández, Inmaculada García, Jose-María Carazo and Roberto Marabini
(2007).
Electron tomography of complex biological specimens on the Grid.
Future Generation Computer Systems, Vol.23, Issue 3, pp.435-446.
abstract
[WP06]
J.R. Bilbao-Castro, A. Merino, I. García, J.M. Carazo and J.J. Fernández
(2007).
Parameter optimization in 3D reconstruction on a large scale grid.
Parallel Computing, Vol. 33, Issues 4-5, pp.250-263.
abstract
[WP06]
Yakushevska, A. E.
Lebbink, M. N.
Geerts, W. J.
Spek, L.
van Donselaar, E. G.
Jansen, K. A.
Humbel, B. M.
Post, J. A.
Verkleij, A. J.
Koster, A. J.
(2007).
STEM tomography in cell biology.
J Struct Biol, vol. 159, n.3, pp.381-91.
abstract
[WP05]
van Niftrik, L.
Geerts, W. J.
van Donselaar, E. G.
Humbel, B. M.
Yakushevska, A.
Verkleij, A. J.
Jetten, M. S.
Strous, M.
(2007).
Combined structural and chemical analysis of the anammoxosome: A membrane-bounded intracytoplasmic compartment in anammox bacteria.
J Struct Biol, June 2.
abstract
[WP05]
van Niftrik, L.
Geerts, W. J.
van Donselaar, E. G.
Humbel, B. M.
Webb, R. I.
Fuerst, J. A.
Verkleij, A. J.
Jetten, M. S.
Strous, M
(2008).
Linking ultrastructure & function in four genera of anaerobic ammonium-oxidizing bacteria: cell plan, glycogen storage and localization of cytochrome c proteins.
J Bacteriol, Vol 190(2), pp.708-717.
abstract
[WP01]
van Driel, L. F.
Knoops, K.
Koster, A. J.
Valentijn, J. A.
(2007).
Fluorescent labeling of resin-embedded sections for correlative electron microscopy using tomography-based contrast enhancement.
J Struct Biol
.
abstract
[WP13]
van Donselaar, E.
Posthuma, G.
Zeuschner, D.
Humbel, B. M.
Slot, J. W.
(2007).
Immunogold labeling of cryosections from high-pressure frozen cells.
Traffic, Vol. 8, n. 5, pp. 471-85.
abstract
[WP05]
Valentijn, K. M.
Valentijn, J. A.
Jansen, K. A.
Koster, A. J.
(2007).
A new look at Weibel-Palade body structure in endothelial cells using electron tomography.
J Struct Biol.
abstract
[WP13]
Sorzano, C. O.
Jonic, S.
Nunez-Ramirez, R.
Boisset, N.
Carazo, J. M.
(2007).
Fast, robust, and accurate determination of transmission electron microscopy contrast transfer function.
J Struct Biol, vol. 160, n. 2, pp. 249-62.
abstract
[WP06]
Sorzano, C. O.
Jonic, S.
Cottevieille, M.
Larquet, E.
Boisset, N.
Marco, S.
(2007).
3D electron microscopy of biological nanomachines: principles and applications.
Eur Biophys J, Vol. 36, n.8, pp.995-1013.
abstract
[WP06]
Scheres, S. H.
Nunez-Ramirez, R.
Gomez-Llorente, Y.
San Martin, C.
Eggermont, P. P.
Carazo, J. M.
(2007).
Modeling experimental image formation for likelihood-based classification of electron microscopy data.
Structure, Vol. 15, n. 10, pp. 1167-77.
abstract
[WP06]
Sartori, A.
Gatz, R.
Beck, F.
Rigort, A.
Baumeister, W.
Plitzko, J. M.
(2007).
Correlative microscopy: bridging the gap between fluorescence light microscopy and cryo-electron tomography.
J Struct Biol, Vol 160, n. 2, pp. 135-45.
abstract
[WP13]
Plisson, C.
White, H. E.
Auzat, I.
Zafarani, A.
Sao-Jose, C.
Lhuillier, S.
Tavares, P.
Orlova, E. V.
(2007).
Structure of bacteriophage SPP1 tail reveals trigger for DNA ejection.
Embo J, Vol 26, n. 15, pp. 3720-8.
abstract
[WP09]
Norlen, L.
Masich, S.
Goldie, K. N.
Hoenger, A.
(2007).
Structural analysis of vimentin and keratin intermediate filaments by cryo-electron tomography.
Exp Cell Res, Vol. 313, n. 10, pp. 2217-27.
abstract
[WP04]
S. Jonic, C.O.S. Sorzano, M. Cottevieille, E. Larquet and N. Boisset
(2007).
A novel method for improvement of visualization of power spectra for sorting cryo-electron micrographs and their local areas.
J. Struct. Biol. Vol. 157, n. 1, pp. 156-167.
abstract
[WP06]
Messaoudii, C.
Boudier, T.
Sanchez Sorzano, C. O.
(2007).
TomoJ: tomography software for three-dimensional reconstruction in transmission electron microscopy.
BMC Bioinformatics, Vol. 8, pp. 288-297.
abstract
[WP06]
Luque, D.
Saugar, I.
Rodriguez, J. F.
Verdaguer, N.
Garriga, D.
Martin, C. S.
Velazquez-Muriel, J. A.
Trus, B. L.
Carrascosa, J. L.
Caston, J. R.
(2007).
Infectious bursal disease virus capsid assembly and maturation by structural rearrangements of a transient molecular switch.
J Virol, Vol. 81, N. 13, pp. 6869 - 78.
abstract
[WP06]
Lucic, V.
Kossel, A. H.
Yang, T.
Bonhoeffer, T.
Baumeister, W.
Sartori, A.
(2007).
Multiscale imaging of neurons grown in culture: from light microscopy to cryo-electron tomography.
J Struct Biol, Vol 160, n. 2, pp. 146-56.
abstract
[WP13]
Lebbink, M. N.
Geerts, W. J.
van der Krift, T. P.
Bouwhuis, M.
Hertzberger, L. O.
Verkleij, A. J.
Koster, A. J.
(2007).
Template matching as a tool for annotation of tomograms of stained biological structures.
J Struct Biol, Vol 158, no 3, pp.327-35.
abstract
[WP05]
Koning, R. I.
Zovko, S.
Barcena, M.
Oostergetel, G. T.
Koerten, H. K.
Galjart, N.
Koster, A. J.
Mieke Mommaas, A.
(2007).
Cryo electron tomography of vitrified fibroblasts: Microtubule plus ends in situ.
J Struct Biol, Aug 29.
abstract
[WP13]
Kondylis, V.
van Nispen tot Pannerden, H. E.
Herpers, B.
Friggi-Grelin, F.
Rabouille, C.
(2007).
The golgi comprises a paired stack that is separated at G2 by modulation of the actin cytoskeleton through Abi and Scar/WAVE.
Dev Cell, Vol 12, n. 6, pp. 901-15.
abstract
[WP01]
Koeck, P. J.
Purhonen, P.
Alvang, R.
Grundberg, B.
Hebert, H.
(2007).
Single particle refinement in electron crystallography: A pilot study.
J Struct Biol, Vol. 160, Issue 2, pp. 344-52.
abstract
[WP07]
Gruska, M.
Medalia, O.
Baumeister, W.
Leis, A.
(2007).
Electron tomography of vitreous sections from cultured mammalian cells.
J Struct Biol.
abstract
[WP04]
Connell, S. R.,Takemoto, C.,Wilson, D. , Wang, H.
Murayama, K.
Terada, T.
Shirouzu, M.
Rost, M.
Schuler, M.
Giesebrecht, J.
Dabrowski, M.
Mielke, T.
Fucini, P.
Yokoyama, S.
Spahn, C. M.
(2007).
Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors.
Mol Cell Vol. 25, n. 5, pp. 751-64.
abstract
[WP09]
Broz P, Müller CA, Müller SA, Philippsen A, Sorg I, Engel A, Cornelis GR.
(2007).
Function and molecular architecture of the Yersinia injectisome tip complex.
Mol Microbiol. 2007 Sep;65(5):1311-20.
abstract
[WP07]
F. Braet, E. Wisse, P. Bomans, P. Frederik, W. Geerts, A. Koster, L. Soon and S. Ringer
(2007).
Contributions of high-resolution correlative imaging techniques in the study of the hepatic sieve in three dimensions.
Microscopy Res. Techn., Vol. 70, n. 3, pp. 230-242.
abstract
[WP13]
K. V. Fernando and S. D. Fuller
(2007).
Determination of astigmatism in TEM images.
J. Struct. Biol. Vol. 157, n. 1, pp. 189-200.
abstract
[WP09]
S. Romero, D. Didry, E. Larquet, N. Boisset, D. Pantaloni and M.-F. Carlier
(2007).
How ATP hydrolysis controls filament assembly from profilin-actin: Implication for formin processivity.
J. Biol. Chem., Vol. 282, n. 11, pp. 8435-8445.
abstract
[WP09]
A. Philippsen, H.-A. Engel and A. Engel
(2007).
The contrast-imaging function for tilted specimens.
Ultramicroscopy, Vol. 107, pp. 202-212.
abstract
[WP07]
G. A. Signorell, T. C. Kaufmann, W. Kukulski, A. Engel and H.-W. Remigy
(2007).
Controlled 2D crystallization of membrane proteins using methyl-beta-cyclodextrin.
J. Struct. Biol. Vol. 157, n. 2, pp. 321-328.
abstract
[WP07]
A. Philippsen, A. D. Schenk, G. A. Signorell, V. Mariani, S. Berneche and A. Engel
(2007).
Collaborative EM image processing with the IPLT image processing library and toolbox.
J. Struct. Biol. Vol. 157, pp. 28-37.
abstract
[WP07]
S. H. W. Scheres, H. Gao, M. Valle, G. T. Herman, P. P. B. Eggermont, J. Frank and J.-M. Carazo
(2007).
Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization.
Nat. Methods, Vol. 4, n. 1, pp. 27-29.
abstract
[WP06]
D. Castano Diez, H. Mueller and A. S. Frangakis
(2007).
Implementation and performance evaluation of reconstruction algorithms on graphics processors.
J. Struct. Biol. Vol. 157, pp. 288-295.
abstract
[WP06]
R. Eudes , K. Le Tuan , J. Delettre , J.-Paul Mornon and I. Callebaut
(2007).
A generalized analysis of hydrophobic and loop clusters within globular protein sequences.
BMC Struct. Biol., Vol. 7, n. 2, Jan. 8, doi:10.1186/1472-6807-7-2.
abstract
[WP06]
S. Nickell, O. Mihalache, F. Beck, R. Hegerl, A. Korinek and W. Baumeister
(2007).
Structural analysis of the 26S proteasome by cryoelectron tomography.
Biochem. Biophys. Res. Commun., Vol. 353, n. 1, pp. 115-120.
abstract
[WP05]
C. Bouchet-Marquis, B. Zuber, A.-M. Glynn, M. Eltsov, M. Grabenbauer, K. N. Goldie, D. Thomas, A. S. Frangakis, J. Dubochet and D. Chretien
(2007).
Visualization of cell microtubules in their native state.
Biol. Cell, Vol. 99, n. 1, pp. 45-53.
abstract
[WP04]
S. Tabik, E.M. Garzón, I. García and J.J. Fernández
(2007).
High performance noise reduction for biomedical multidimensional data.
Digital Signal Processing, Vol. 17, Issue 4, pp.724-736.
abstract
[WP06]
Agirrezabala, X.
Velazquez-Muriel, J. A.
Gomez-Puertas, P.
Scheres, S. H.
Carazo, J. M.
Carrascosa, J. L.
(2007).
Quasi-atomic model of bacteriophage t7 procapsid shell: insights into the structure and evolution of a basic fold.
Structure, Vol.15, pp.461-472.
abstract
[WP06]
Nickell, S.
Beck, F.
Korinek, A.
Mihalache, O.
Baumeister, W.
Plitzko, J. M.
(2007).
Automated cryoelectron microscopy of "single particles" applied to the 26S proteasome.
FEBS Lett, Vol. 581, pp.2751-2756.
abstract
[WP05]
Braet, F.
Wisse, E.
Bomans, P.
Frederik, P.
Geerts, W.
Koster, A.
Soon, L.
Ringer, S.
(2007).
Contribution of high-resolution correlative imaging techniques in the study of the liver sieve in three-dimensions.
Microsc Res Tech Vol. 70, pp.230-242.
abstract
[WP01]
Müller, S.A. Engel, A.
(2006).
Biological Scanning Transmission Electron.
Chimia 60, 749-753.
abstract
[WP07]
A. Costa, T. Pape, M. van Heel, P. Brick, A. Patwardhan and S. Onesti
(2006).
Structural basis of the Methanothermobacter thermautotrophicus MCM helicase activity.
Nucleic Acids Res.,Vol. 34, n. 20, pp. 5829-5838.
abstract
[WP10]
J. A.G. Briggs, M. C. Johnson, M. N. Simon, S. D. Fuller and V. M. Vogt
(2006).
Cryo-electron microscopy reveals conserved and divergent features of gag packing in immature particles of Rous sarcoma virus and human immunodeficiency virus.
J. Mol. Biol.,Vol. 355, n. 1, pp. 157-168.
abstract
[WP09]
J. A.G. Briggs, K. Gruenewald, B. Glass, F. Foerster, H.-G. Kraeusslich and S. D. Fuller
(2006).
The mechanism of HIV-1 core assembly: insights from three-dimensional reconstructions of authentic virions.
Structure,Vol. 14, n. 1, pp. 15-20.
abstract
[WP09]
J. T. Huiskonen, F. de Haas, D. Bubeck, D. H. Bamford, S. D. Fuller and S. J. Butcher
(2006).
Structure of the bacteriophage phi6 nucleocapsid suggests a mechanism for sequential RNA packaging.
Structure, Vol. 14, n. 6, pp. 1039-1084.
abstract
[WP09]
A. Pelikan Conchaudron, D. Didry, K. Ho Diep Le, E. Larquet, N. Boisset, D. Pantaloni and M.-France Carlier
(2006).
Analysis of tetramethylrhodamine-labeled actin polymerization and interaction with actin regulatory proteins.
J. Biol. Chem.,Vol. 281, n. 33, pp. 24036-24047.
abstract
[WP09]
P. A. Penczek, C. Yang, J. Frank and C. M.T. Spahn
(2006).
Estimation of variance in single-particle reconstruction using the bootstrap technique.
J. Struct. Biol.,Vol. 154, n. 2, pp. 168-183.
abstract
[WP09]
P. A. Penczek, J. Frank and C. M.T. Spahn
(2006).
A method of focused classification, based on the bootstrap 3D variance analysis, and its application to EF-G-dependent translocation.
J. Struct. Biol.,Vol. 154, n. 2, pp. 184-194.
abstract
[WP09]
C. B. F. Andersen, T. Becker, M. Blau, M. Anand, M. Halic, B. Balar, T. Mielke, T. Boesen, J. Skov Pedersen, C. M. T. Spahn, T. Goss Kinzy, G. R. Andersen and R. Beckmann
(2006).
Structure of eEF3 and the mechanism of transfer RNA release from the E-site.
Nature, Vol. 443, n. 7112, pp. 663-668.
abstract
[WP09]
M. Schueler, S. R Connell, A. Lescoute, J. Giesebrecht, M. Dabrowski, B. Schroeer, T. Mielke, P. A. Penczek, E. Westhof and C. M. T. Spahn
(2006).
Structure of the ribosome-bound cricket paralysis virus IRES RNA.
Nat. Struct. Mol. Biol., Vol. 13, n. 12, pp. 1092-1096.
abstract
[WP09]
M. B. Sherman, R. H. Guenther, F. Tama, T. L. Sit, C. L. Brooks, A. M. Mikhailov, E. V. Orlova, T. S. Baker and S. A. Lommel
(2006).
Removal of divalent cations induces structural transitions in red clover necrotic mosaic virus, revealing a potential mechanism for RNA release.
J. Virol., Vol. 80, pp. 10395-10406.
abstract
[WP09]
K. Wyatt, H. E. White, L. Wang, O. A. Bateman, C. Slingsby, E. V. Orlova and G. Wistow
(2006).
Lengsin is a survivor of an ancient family of class I glutamine synthetases re-engineered by evolution for a role in the vertebrate lens.
Structure, Vol. 14, n. 12, pp. 1823-1834.
abstract
[WP09]
A. L. Okorokov, M. B. Sherman, C. Plisson, V. Grinkevich, K. Sigmundsson, G. Selivanova, J. Milner and E. V. Orlova
(2006).
The structure of p53 tumour suppressor protein reveals the basis for its functional plasticity.
EMBO J., Vol. 25, pp. 5191-5200.
abstract
[WP09]
D. K. Clare, P. J. Bakkes, H. van Heerikhuizen, S. M. van der Vies and H. R. Saibil
(2006).
An expanded protein folding cage in the GroEL-gp31 complex.
J. Mol. Biol. , Vol. 358, n. 3, pp. 905-911.
abstract
[WP09]
D. K. Clare, E. V. Orlova, M. A. Finbow, M. A. Harrison, J. B.C. Findlay and H. R.Saibil
(2006).
An expanded and flexible form of the vacuolar ATPase membrane sector.
Structure, Vol. 14, pp. 1149-1156.
abstract
[WP09]
H. E. White, E. V. Orlova, S. Chen, L. Wang, A. Ignatiou, B. Gowen, T. Stromer, T. M. Franzmann, M. Haslbeck, J. Buchner, and H. R. Saibil
(2006).
Multiple distinct assemblies reveal conformational flexibility in the small heat shock protein Hsp26.
Structure, Vol. 14, pp. 1197-1204.
abstract
[WP09]
C. K. Vaughan, U. Gohlke, F. Sobott, V. M. Good, M. M.U. Ali, C. Prodromou, C. V. Robinson, H. R. Saibil, and L. H. Pearl
(2006).
Structure of an Hsp90-Cdc37-Cdk4 complex.
Mol. Cell Vol. 23, pp. 697-707.
abstract
[WP09]
C. Messaoudi, N. Garreau de Loubresse, T. Boudier, P. Dupuis-Williams and S. Marco
(2006).
Multiple-axis tomography: Applications to basal bodies from Paramecium tetraurelia.
Biol. Cell Vol. 98, pp. 415-425.
abstract
[WP06]
A. Roeben, J. M. Plitzko, R. Koerner, U. M.K. Boettcher, K. Siegers, M. Hayer-Hartl and A. Bracher
(2006).
Structural basis for subunit assembly in UDP-glucose pyrophosphorylase from Saccharomyces cerevisiae.
J. Mol. Biol. Vol. 364, n. 4, pp. 551-560.
abstract
[WP05]
F. Lazaro-Dieguez, N. Jimenez, H. Barth, A. J. Koster, J. Renau-Piqueras, J. L. Llopis, K. N. J. Burger and G. Egea
(2006).
Actin filaments are involved in the maintenance of Golgi cisternae morphology and intra-Golgi pH.
Cell Motil. Cytoskeleton Vol. 63, n. 12, pp. 778-791..
abstract
[WP05]
L. Norlen
(2006).
Stratum corneum keratin structure, function and formation - a comprehensive review.
Int. J. Cosm. Sci. Vol. 28, pp. 397-425.
abstract
[WP04]
S. Masich, T. Oestberg, L. Norlen, O. Shupliakov and B. Daneholt
(2006).
A procedure to deposit fiducial markers on vitreous cryo-sections for cellular tomography.
J. Struct. Biol. Vol. 156, n. 3, pp. 461-468.
abstract
[WP04]
J. Velazquez-Muriel, M. Valle, A. Santamaria-Pang, I. Kakadiaris and J.M.Carazo
(2006).
Flexible fitting in 3DEM guided by the structural variability of protein superfamilies.
Structure Vol. 14, n. 7, pp. 1115-1126.
abstract
[WP06]
D. Gil, J.M. Carazo and R. Marabini
(2006).
On the nature of 2D crystal unbending.
J. Struct. Biol. Vol. 156, n. 3, pp. 546-555.
abstract
[WP07]
A. Costa, T. Pape, M. van Heel, P. Brick, A. Patwardhan and S. Onesti
(2006).
Structural studies of the archaeal MCM complex in different functional states.
J. Struct. Biol. Vol. 156, n. 1, pp. 210-219.
abstract
[WP10]
S. Svensson, M. Gedda, D. Fanelli, U. Skoglund, L.G. Ofverstedt and S. Sandin
(2006).
Using a fuzzy framework for delineation and decomposition of Immunoglobulin G in cryo electron tomographic images.
IEEE Conf. Proc: ICPR 2006. 18th Int. Conf. on Pattern Recognition Vol. 4, pp. 687-690.
abstract
[WP08]
C. Tomova, W.J.C. Geerts, T. Mueller-Reichert, R. Entzeroth and B.M. Humbel
(2006).
New comprehension of the apicoplast of Sarcocystis by transmission electron tomography.
Biol. Cell Vol. 98, n. 9, pp. 535-545.
abstract
[WP05]
D. Zeuschner, W.J. Geerts, E. van Donselaar, B.M. Humbel, J.W. Slot, A.J. Koster and J. Klumperman
(2006).
Immuno-electron tomography of ER exit sites reveals the existence of free COPII-coated transport carriers.
Nat. Cell Biol. Vol. 8, n. 4, pp. 377-383.
abstract
[WP05]
N. Jimenez, B.M. Humbel, E. van Donselaar, A.J. Verkleij and K.N. Burger
(2006).
Aclar discs: A versatile substrate for routine high-pressure freezing of mammalian cell monolayers.
J. Microsc. Vol. 221, Pt. 3, pp. 216-223.
abstract
[WP05]
B.K. Garvalov, B. Zuber, C. Bouchet-Marquis, M. Kudryashev, M. Gruska, M. Beck, A. Leis, F. Frischknecht, F. Bradke, W. Baumeister, J. Dubochet and M. Cyrklaff
(2006).
Luminal particles within cellular microtubules.
J. Cell Biol. Vol. 174, n. 6, pp. 759-765.
abstract
[WP04]
B. Zuber, M. Haenni, T. Ribeiro, K. Minnig, F. Lopes, P. Moreillon and J. Dubochet
(2006).
Granular layer in the periplasmic space of gram-positive bacteria and fine structures of Enterococcus gallinarum and Streptococcus gordonii septa revealed by cryo-electron microscopy of vitreous sections.
J. Bacteriol. Vol. 188, n. 18, pp. 6652-6660.
abstract
[WP04]
M. Eltsov and J. Dubochet
(2006).
Rebuttal: Ring-like nucleoids and DNA repair in Deinococcus radiodurans.
J. Bacteriol. Vol. 188, n. 17, p. 6052.
[WP04]
M. Eltsov and J. Dubochet
(2006).
Study of the Deinococcus radiodurans nucleoid by cryoelectron microscopy of vitreous sections: Supplementary comments.
J. Bacteriol. Vol. 188, n. 17, pp. 6053-6058; discussion 6059.
[WP04]
M. Eltsov and B. Zuber
(2006).
Transmission electron microscopy of the bacterial nucleoid.
J. Struct. Biol. Vol. 156, n. 2, pp. 246-254.
abstract
[WP04]
M. Tagari, J. Tate, G.J. Swaminathan, R. Newman, A. Naim, W. Vranken, A. Kapopoulou, A. Hussain, J. Fillon, K. Henrick and S. Velankar
(2006).
E-MSD: Improving data deposition and structure quality.
Nucleic Acids Res. Vol. 34 (Database issue), pp. D287-290.
abstract
[WP03]
H.M. Berman, S.K. Burley, W. Chiu, A. Sali, A. Adzhubei, P.E. Bourne, S.H. Bryant, R.L. Jr. Dunbrack, K .Fidelis, J. Frank, A. Godzik, K. Henrick, A. Joachimiak, B. Heymann, D. Jones, J.L. Markley, J. Moult, G.T. Montelione, C. Orengo, M.G. Rossmann, B. Rost, H. Saibil, T. Schwede, D.M. Standley and J.D. Westbrook
(2006).
Outcome of a workshop on archiving structural models of biological macromolecules.
Structure Vol. 14, n. 8, pp. 1211-1217.
abstract
[WP03]
A.P. Leis, M. Beck, M. Gruska, C. Best, R. Hegerl, W. Baumeister and J.W. Leis
(2006).
Cryo-electron tomography of biological specimens.
IEEE Signal Process. Mag. Vol. 23, n. 3, pp. 95-103.
abstract
[WP05]
D. Castano Diez, A. Seybert and A.S. Frangakis
(2006).
Tilt-series and electron microscope alignment for the correction of the non-perpendicularity of beam and tilt-axis.
J. Struct. Biol. Vol. 154, n. 2, pp. 195-205.
abstract
[WP06]
J.R. Bilbao-Castro, J.M. Carazo, I. Garcia and J.J. Fernandez
(2006).
Parallelization of reconstruction algorithms in three-dimensional electron microscopy.
Appl. Math. Modell. Vol. 30, pp. 688-701.
abstract
[WP06]
J.J. Fernandez, C.O.S. Sorzano, R. Marabini and J.M. Carazo
(2006).
Image processing and 3-D reconstruction in electron microscopy.
IEEE Signal Process. Mag. Vol. 23, n. 3, pp. 84-94.
abstract
[WP06]
J.J. Fernandez, S. Li and R.A. Crowther
(2006).
CTF determination and correction in electron cryotomography.
Ultramicroscopy Vol. 106, pp. 587-596.
abstract
[WP06]
M.H. Tattum, S. Cohen-Krausz, A. Khalili-Shirazi, G.S. Jackson, E.V. Orlova, J. Collinge, A.R. Clarke and H.R. Saibil
(2006).
Elongated oligomers assemble into mammalian PrP amyloid fibrils.
J. Mol. Biol. Vol. 357, pp. 975-985.
abstract
[WP09]
N.A. Ranson, D.K. Clare, G.W. Farr, D. Houldershaw, A.L. Horwich and H.R. Saibil
(2006).
Allosteric signalling of ATP hydrolysis in GroEL-GroES complexes.
Nat. Struct. Mol. Biol. Vol. 13, pp. 147-152.
abstract
[WP09]
E. Gherardi, S. Sandin, M.V. Petoukhov, J. Finch, M.E. Youles, L.-G. Öfverstedt, R.N. Miguel, T.L. Blundell, G.F. van der Woude, U. Skoglund and D.I. Svergun
(2006).
Structural basis of hepatocyte growth factor/scatter factor and MET signalling.
Proc. Natl Acad. Sci. USA Vol. 103, pp. 4046-4051.
abstract
[WP08]
M. Valle, X.S. Chen, L.E. Donate, E. Fanning and J.M. Carazo
(2006).
Structural basis for the cooperative assembly of large T antigen on the origin of replication.
J. Mol. Biol. Vol. 357, n. 4, pp. 1295-1305.
abstract
[WP06]
R. Nunez-Ramirez, Y. Robledo, P. Mesa, S. Ayora, J.C. Alonso, J.M. Carazoand and L.E. Donate
(2006).
Quaternary polymorphism of replicative helicase G40P: Structural mapping and domain rearrangement.
J. Mol. Biol. Vol.357, n. 4, pp. 1063-1076.
abstract
[WP06]
A. Scheffel, M. Gruska, D. Faivre, A. Linaroudis, J.M. Plitzko and D. Schueler
(2006).
An acidic protein aligns magnetosomes along a filamentous structure in magnetotactic bacteria.
Nature Vol. 440, n. 7080, pp. 110-4.
abstract
[WP05]
S. Nickell, C. Kofler, A.P. Leis and W. Baumeister
(2006).
A visual approach to proteomics.
Nat. Rev. Mol. Cell Biol. Vol. 7, n. 3, pp. 225-230.
abstract
[WP05]
D. Rodriguez, M. Barcena, W. Mobius, S. Schleich, M. Esteban, W.J.C. Geerts, A.J. Koster, G. Griffiths and J.K. Locker
(2006).
A vaccinia virus lacking A10L: viral core proteins accumulate on structures derived from the endoplasmic reticulum.
Cell. Microbiol. Vol. 8, n. 3, pp. 427-37.
abstract
[WP05]
M. van Heel and M. Schatz
(2005).
Fourier shell correlation threshold criteria.
J. Struct. Biol. Vol. 151, pp. 250-62.
abstract
[WP11]
R. Aramayo, C. Mérigoux, E. Larquet, P. Bron, J.P. Pérez, C. Dumas, P. Vachette and N. Boisset
(2005).
Divalent ion-dependent swelling of Tomato Bushy Stunt Virus: A multi-approach study.
Biochim. Biophys. Acta Vol. 1724, pp. 345-54.
abstract
[WP09]
J.A. Briggs, J.T. Huiskonen, K.V. Fernando, R.J. Gilbert, P. Scotti, S.J. Butcher and S.D. Fuller
(2005).
Classification and three-dimensional reconstruction of unevenly distributed or symmetry mismatched features of icosahedral particles.
J. Struct. Biol. Vol. 150, pp. 332-9.
abstract
[WP09]
S.J. Tilley, E.V. Orlova, R.J.C. Gilbert, P.W. Andrew and H.R. Saibil
(2005).
Structural basis of pore formation by the bacterial toxin pneumolysin.
Cell. Vol. 121, pp. 247-256.
abstract
[WP09]
R.J. Fletcher, J. Shen, Y. Gomez-Llorente, C.S. Martin, J.M. Carazo and X.S. Chen
(2005).
Double hexamer disruption and biochemical activities of Methanobacterium thermoautotrophicum MCM.
J. Biol. Chem. Vol. 280, n. 51, pp. 42405-10.
abstract
[WP06]
Y. Gomez-Llorente, R.J. Fletcher, X.S. Chen, J.M. Carazo and C. San Martin
(2005).
Polymorphism and double hexamer structure in the archaeal minichromosome maintenance (MCM) helicase from Methanobacterium thermoautotrophicum.
J. Biol. Chem. Vol. 280, n. 49, pp. 40909-15.
abstract
[WP06]
J. Velazquez-Muriel, C.O.S. Sorzano, S.H.W. Scheres and J.-M. Carazo
(2005).
SPI-EM: Towards a tool for predicting CATH superfamilies in 3D-EM maps.
J. Mol. Biol. Vol. 345, pp. 759-771.
abstract
[WP06]
X. Agirrezabala, J. Martín-Benito, J.R. Castón, R. Miranda, J.M. Valpuesta and J.L. Carrascosa
(2005).
Maturation of phage T7 involves structural modification of both shell and inner core components.
EMBO J. Vol. 24, pp. 3820-3829.
abstract
[WP06]
M. Grabenbauer, W.J.C. Geerts, J. Fernadez-Rodriguez, A. Honger, A.J. Koster and T. Nilsson
(2005).
Correlative microscopy and electron tomography of GFP through photooxidation.
Nat. Methods. Vol. 2, n. 11, pp. 857-862.
abstract
[WP05]
B. Zuber, I. Nikonenko, P. Klauser, D. Muller and J. Dubochet
(2005).
The mammalian central nervous synaptic cleft contains a high density of periodically organized complexes.
Proc. Natl. Acad. Sci. USA. Vol. 102, n. 52, pp. 19192-7.
abstract
[WP04]
M. Eltsov and J. Dubochet
(2005).
Fine structure of the Deinococcus radiodurans nucleoid revealed by cryoelectron microscopy of vitreous sections.
J. Bacteriol. Vol. 187, n. 23, pp. 8047-54.
abstract
[WP04]
X. Agirrezabala, J. Martín-Benito, M. Valle, J.M. González, A. Valencia, J.M. Valpuesta and J.L. Carrascosa
(2005).
Structure of the connector of bacteriophage T7 at 8 A resolution. Structural homologies of a DNA translocating machine.
J. Mol. Biol. Vol. 347, pp. 895-902.
abstract
[WP06]
S.H.W. Scheres, M. Valle and J.-M. Carazo
(2005).
Fast maximum-likelihood refinement of electron microscopy images.
Bioinformatics. Vol. 21, n. 2, pp. ii243 – ii244.
abstract
[WP06]
S.H.W. Scheres, M. Valle, R. Nuñez, C.O.S. Sorzano, R. Marabini, G.T. Herman and J.M. Carazo
(2005).
Maximum likelihood multi-reference refinement for electron microscopy images.
J. Mol. Biol. Vol. 348, pp. 139 – 149.
abstract
[WP06]
S.H.W. Scheres, R. Marabini, S. Lanzavecchia, F. Cantele, T. Rutten, S.D. Fuller, J.-M. Carazo, R.M. Burnett and C. San Martín
(2005).
Classification of single-projection reconstructions for cryo-electron microscopy data of icosahedral viruses.
J. Struct. Biol. Vol. 151, pp. 79-91.
abstract
[WP06]
G. van Duinen, M. van Heel and A. Patwardhan
(2005).
Magnification variations due to illumination curvature and object defocus in transmission electron microscopy.
Opt. Express Vol. 13, pp. 9085-9093.
abstract
[WP10]
J.J. Fernandez and S. Li
(2005).
Anisotropic nonlinear filtering of cellular structures in cryoelectron tomography.
IEEE Computing in Science and Engineering Vol. 7, n. 5, pp. 54-61.
abstract
[WP06]
A. Al-Amoudi, D. Studer and J. Dubochet
(2005).
Cutting artefacts and cutting process in vitreous sections for cryo-electron microscopy..
J. Struct. Biol. Vol. 150, pp. 109-121.
abstract
[WP04]
L. Bongini, D. Fanelli, F. Piazza, P. De Los Rios, S. Sandin and U. Skoglund
(2005).
Dynamics of antibodies from cryo-electron tomography.
Biophys. Chem. Vol. 115, pp. 235-240.
abstract
[WP08]
A. Al-Amoudi, J. Dubochet and L. Norlén
(2005).
Nanostructure of the epidermal extracellular space as observed by cryo-electron microscopy of vitreous sections of human skin..
J. Invest. Dermatol. Vol. 124, pp. 764-77.
abstract
[WP04]
M. Cyrklaff , C. Risco, J.J. Fernández , M. V. Jiménez, M. Estéban, W. Baumeister and J.L. Carrascosa
(2005).
Cryo-electron tomography of vaccinia virus.
Proc. Natl. Acad. Sci. USA. Vol. 102, n. 8, pp. 2772-7.
abstract
[WP06]
S. Nickell, F. Förster, A. Linaroudis, W. Del Net, F. Beck, R. Hegerl, W. Baumeister and J.M. Plitzko
(2005).
TOM software toolbox: acquisition and analysis for electron tomography .
J. Struct. Biol. Vol. 149, pp. 227-234.
abstract
[WP05]
H.E. White, H.R. Saibil, A. Ignatiou and E.V. Orlova
(2004).
Recognition and separation of single particles with size variation by statistical analysis of their images.
J. Mol. Biol. Vol. 336, pp. 453-46.
abstract
[WP09]
J. Wartiovaara, L.-G. Öfverstedt, J. Khoshnoodi, J. Zhang, E. Mäkela, S. Sandin, V. Ruotsalainen, R.H. Cheng, H. Jalanko, U. Skoglund and K.J. Tryggvason
(2004).
Nephrin strands contribute to a porous slit diaphragm scaffold as revealed by electron tomography.
J. Clin. Invest. Vol. 114, pp. 1475-83.
abstract
[WP08]
L. Bongini, D. Fanelli, F. Piazza, P. De Los Rios, S. Sandin and U. Skoglund
(2004).
Freezing immunoglobins to see them move.
Proc. Natl. Acad. Sci. USA. Vol. 101, pp. 6466-6471.
abstract
[WP08]
P.J.B. Koeck
(2004).
Missing data in image and signal processing: The case of binary objects.
Optik Vol. 115, pp. 459-472.
abstract
[WP07]
H.S. Kweon, G.V. Beznoussenko, M. Micaroni, R.S. Polishchuk, A. Trucco, O. Martella, D. Di Giandomenico, P. Marra, A. Fusella, A. Di Pentima, E.G. Berger, W.J. Geerts, A.J. Koster, K.N. Burger, A. Luini and A.A. Mironov
(2004).
Golgi enzymes are enriched in perforated zones of golgi cisternae but are depleted in COPI vesicles.
Mol. Biol. Cell. Vol. 15, pp. 4710-24.
abstract
[WP05]
J.-L.A.N. Murk, M.N. Lebbink, B.M. Humbel, W.J.C. Geerts, J.M. Griffith, D.M.L. Langenberg, F.A.W. Verreck, A.J. Verkleij, A.J. Koster, H.J. Geuze and M.J. Kleijmeer
(2004).
3-D Structure of Multilaminar Lysosomes in Antigen Presenting Cells Reveals Trapping of MHC II on the Internal Membranes.
Traffic Vol. 5, pp. 936-46.
abstract
[WP05]
A. Trucco, R.S. Polishchuk, O. Martella, A. Di Pentima, A. Fusella, D. Di Giandomenico, E. San Pietro, G.V. Beznoussenko, E.V. Polishchuk, M. Baldassarre, R. Buccione, W.J. Geerts, A.J. Koster, K.N. Burger, A.A. Mironov and A. Luini
(2004).
Secretory traffic triggers the formation of tubular continuities across Golgi sub-compartments.
Nat. Cell Biol. Vol. 6, pp. 1071-81.
abstract
[WP05]
L. Norlén and A. Al-Amoudi
(2004).
Stratum corneum keratin structure, function and formation - the cubic rod-packing and membrane templating model.
J. Invest. Dermatol. Vol. 123, pp. 715-732.
abstract
[WP04]
A. Al-Amoudi, L.P.O. Norlén and J. Dubochet
(2004).
Cryo-electron microscopy of vitreous sections of native biological cells and tissues.
J. Struct. Biol. Vol. 148, pp. 131-135.
abstract
[WP04]
A. Al-Amoudi, J.J. Chang, A. Leforestier, A. McDowall, L.-A. Salamin, L.P.O. Norlén, K. Richter, N. Sartori Blanc, D. Studer J. and Dubochet
(2004).
Cryo-electron microscopy of vitreous sections.
EMBO J. Vol. 23, pp. 3583-3588.
abstract
[WP04]